ap_shuffled_sequence_alignment

Reads a FASTA file with two sequences and calculate global sequence alignment scores with one sequence

randomly shuffled. The statistics of scores from randomised alignments is then used to estimate p-value of the global alignment.

The program prints all the randomized alignment scores and estimated p-value of the alignment

USAGE: ap_shuffled_sequence_alignment test_inputs/ferrodoxins.fasta [N_shuffles]

Keywords:

Categories:

  • core::alignment::NWAligner
../_images/ap_shuffled_sequence_alignment.png