ap_rescore_alignment

Reads in a sequence alignment in a FASTA format and recalculates its score. By default it uses

BLOSUM62 substitution matrix with -10 and -1 as gap opening and gap extension penalty, respectively. These parameters may be changed from command line (optional parameters)

USAGE: ap_rescore_alignment ali.fasta [BLOSUM62 -10 -1]

Keywords:

Categories:

  • core/alignment/on_alignment_computations.cc
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