Reads a PDB file and writes protein sequence(s) in FASTA format.

The program also writes secondary structure in FASTA format, if this data is available from PDB headers. The sequence comprise only these amino acid residues which have C-alpha atom User can select a chain by providing its code as the second argument of the program. The program also writes PDB file that corresponds to the sequence.

USAGE: ap_pdb_to_fasta_ss 5edw.pdb A


  • core::data::io::Pdb; core::algorithms::Not; core::data::sequence::SecondaryStructure