ap_filter_fasta

ap_find_in_fasta reads a file in FASTA format and prints only these sequences which satisfy the following filters:
  • sequence must a protein
  • sequence must not be shorter than 15 aa
  • sequence must contain at most 10 UNK residues

The output sequences are sorted. USAGE: ap_filter_fasta input.fasta [input2.fasta …]

Keywords:

Categories:

  • core/data/io/fasta_io
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