ap_contact_map_overlap calculates overlap between contact maps calculated for two (or more) structures

USAGE: ap_contact_map_overlap CA native.pdb models.pdb cutoff 8.0 In this case the program evaluates contact map overlap (measured by Jaccard coefficient) between the native structure and every model found in models.pdb. 8.0 is the contact distance in Angstroms and CA defines the contact map type; allowed options are: CA CB and SC for Calpha, C-beta and all atom side chain, respectively


  • core::calc::structural::ContactMap