ap_contact_map

ap_contact_map calculates a contact map for a given protein structure

If a multi-model PDB file was given, the program prints contact count observed in all models

USAGE: ap_contact_map CA 2kwi.pdb.pdb 4.5

where 2kwi.pdb is the input file and 4.5 the contact distance in Angstroms. CA defines the contact map type; allowed options are: CA CB and SC for Calpha, C-beta and all atom side chain, respectively

Categories:

  • core::calc::structural::ContactMap
../_images/ap_contact_map.png