ap_blastxml_to_fasta reads a XML file produced by PsiBlast and extracts sequences of all hits.

The list of hits is divided into sections, according to the psiblast iteration when a given subject sequence was detected. The sequences are written on the screen in FASTA format

USAGE: ap_blastxml_to_fasta blastout.xml


  • core::data::io::XML; core::algorithms::trees::TreeNode