ap_SWAligner

Calculate all pairwise local sequence alignments (Smith&Waterman algorithm) between sequences read from a FASTA file.

For every pair of sequences it prints three columns: query length, template length and the alignment score.

USAGE: ap_SWAligner test_inputs/ferrodoxins.fasta test_inputs/ferrodoxins.fasta

Keywords:

Categories:

  • core/alignment/SWAligner
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