ap_NWAligner

Calculate all pairwise global sequence alignments (Needleman & Wunsh algorithm) between sequences read from a FASTA file.

For every pair of sequences it prints three columns: query length, template length and the alignment score.

USAGE: ap_NWAligner test_inputs/ferrodoxins.fasta test_inputs/ferrodoxins.fasta [BLOSUM80]

The substitution matrix name (here: BLOSUM80) is an optional parameter

Categories:

  • core/alignment/NWAligner
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